Larmande P., Pitollat B., Tando N., Pomie Y., Happi Happi B.G., Guignon V., Ruiz M. 2025. AgroLD: a knowledge graph for the plant sciences. BMC Genom Data. 26.

Ahmad JM, Liu Y, Kim JD, Yao X, Larmande P, Xia J. 2025. A curation system of rice trait ontology with reliable interoperation by LLM and PubAnnotation. Genomics Inform. 23.

Jradeh CK., Raoufi E., David J., Larmande P., Scharffe F., Todorov K., Trojahn C. 2025. Graph Embeddings Meet Link Keys Discovery for Entity Matching. Proceedings of the ACM on Web Conference. 3344-3353.

Raoufi E., Happi Happi BG., Larmande P., Scharffe F., Todorov K. 2025. Analysis of the Performance of Representation Learning Methods for Entity Alignment: Benchmark Versus Real-World Data. Semantic Web. 17.

Happi Happi BG, Pelap GF, Symeonidou D, Larmande P. 2025. GRU-SCANET: unleashing the power of GRU-based sinusoidal capture network for precision-driven named entity recognition. . Bioinform Adv.. 16:5(1) . vbaf096.

Yacoubi A.N, Bernard S., Bossy R., Courtin M., Happi Happi BH., Larmande P., Michel F., Nedellec C., Roussey C., Faron C. 2024. A unified approach to publish semantic annotations of agricultural documents as knowledge graphs. Smart Agricultural Technology. 8. 100484.

Cheaib M., Nguyen HT., Couderc M., Serret J, Soriano A., Larmande P., Richter C., Junker BH., Raorane ML., Petitot AS., Champion A. 2024. Transcriptomic and metabolomic reveal OsCOI2 as the jasmonate-receptor master switch in rice root. PLoS ONE. 19.

Shrestha A., Gonzales M., Ong P., Larmande P., Lee H. S., Jeung J. U., Kohli A., Chebotarov D., Mauleon R. P., Lee J. S., Mcnally K. L. 2024. RicePilaf: a post-GWAS/QTL dashboard to integrate pangenomic, coexpression, regulatory, epigenomic, ontology, pathway, and text-mining information to provide functional insights into rice QTLs and GWAS loci. Gigascience. 13. giae013.

Ayadi N., Bernard S., Bossy R., Courtin M., Happi Happi B. G., Larmande P., Michel F., Nedellec C., Roussey C., Faron C. 2024. A Unified approach to publish semantic annotations of agricultural documents as knowledge graphs. Smart Agricultural Technology. 8. 43.

Larmande P., Liu Y., Yao X., Xia J. 2021. OryzaGP 2021 update: a rice gene and protein dataset for named-entity recognition. Genomics & Informatics. 19 (3). e27.

Do Q., Bich Hai H., Larmande P. 2021. PyRice: a Python package for querying Oryza sativa databases. Bioinformatics. 37 (7). 1037-1038.

Larmande P., Jibril K. M. 2020. Enabling a fast annotation process with the Table2Annotation tool. Genomics & Informatics. 18 (2). e19.

Gaubou B., Huynh N. Q., Philippon D., Brugiere A., Chapuis K., Taillandier P., Larmande P., Drogoul A. 2020. COMOKIT: A Modeling Kit to Understand, Analyze, and Compare the Impacts of Mitigation Policies Against the COVID-19 Epidemic at the Scale of a City. Frontiers in Public Health. 8. 563247.

Sempéré G., Petel A., Rouard M., Frouin J., Hueber Y., De Bellis F., Larmande P. 2019. Gigwa v2—Extended and improved genotype investigator. GigaScience. 8(5). giz051.

Abbeloos R., Backlund J. E., Basterrechea Salido M., Bauchet G., Benites-Alfaro O., Birkett C., Calaminos V. C., Carceller P., Cornut G., Vasques Costa B., Edwards J. D., Finkers R., Gao S. Y., Ghaffar M., Glaser P., Guignon V., Hok P., Kilian A., König P., Lagare J. E. B., Lange M., Laporte M.-A., Larmande P., LeBauer D. S., Lyon D. A., Marshall D. S., Matthews D., Milne I., Mistry N., Morales N., Mueller L. A., Neveu P., Papoutsoglou E., Pearce B., Perez-Masias I., Pommier C., Ramírez-González R. H., Rathore A., Raquel A. M., Raubach S., Rife T., Robbins K., Rouard M., Sarma C., Scholz U., Sempéré G., Shaw P. D., Simon R., Soldevilla N., Stephen G., Sun Q., Tovar C., Uszynski G., Verouden M., The BrAPI consortium. 2019. BrAPI—an application programming interface for plant breeding applications. Bioinformatics. 35(20). 4147-4155.

Scheben A., Chan C.-K., Mansueto L., Mauleon R., Larmande P., Alexandrov N., Wing R., Mcnally K., Quesneville H., Edwards D. 2019. Progress in single-access information systems for wheat and rice crop improvement. Briefings in Bioinformatics. 20(2). 565-571.

Nti-Addae Y., Matthews D., Ulat V. J., Syed R., Sempéré G., Pétel A., Renner J., Larmande P., Guignon V., Jones E., Robbins K. 2019. Benchmarking database systems for Genomic Selection implementation. Database - The journal of Biological Databases and Curation. 2019. baz096.

Larmande P., Do H., Wang Y. 2019. OryzaGP: rice gene and protein dataset for named-entity recognition. Genomics & Informatics. 17 (2). e17.

Juanillas V., Dereeper A., Beaume N., Droc G., Dizon J., Mendoza J. R., Perdon J. P., Mansueto L., Triplett L., Lang J., Zhou G., Ratharanjan K., Plale B., Haga J., Leach J., Ruiz M., Thomson M., Alexandrov N., Larmande P., Kretzschlar T., Mauleon R. 2019. Corrigedum to: Rice Galaxy: an open resource for plant science. GigaScience. 8 (12). giz156.