Tibiri E. B., Boua P. R., Soulama I., Tranchant-Dubreuil C., Tando N., Tollenaere C., Brugidou C., Nanema R. K., Tiendrebeogo F.. 2025. Challenges and opportunities of developing bioinformatics platforms in Africa: the case of BurkinaBioinfo at Joseph Ki-Zerbo University, Burkina Faso. Briefings in Bioinformatics. 26(1). bbaf040.

Millet C. P., Allinne C., Vi T., Marraccini P., Verleysen L., Couderc M., Ruttink T., Zhang D., Sanchez W., Tranchant-Dubreuil C., Jeune W., Poncet V.. 2024. Haitian coffee agroforestry systems harbor complex arabica variety mixtures and under-recognized genetic diversity. PLOS ONE. 19(4). e0299493.

Salojaervi J., Rambani A., Yu Z., Guyot R., Strickler S., Lepelley M., Wang C., Rajaraman S., Rastas P., Zheng C. F., Munoz D. S., Meidanis J., Paschoal A. R., Bawin Y., Krabbenhoft T. J., Wang Z. Q., Fleck S. J., Aussel R., Bellanger L., Charpagne A., Fournier C., Kassam M., Lefebvre G., Metairon S., Moine D., Rigoreau M., Stolte J., Hamon P., Couturon E., Tranchant-Dubreuil C., Mukherjee M., Lan T. Y., Engelhardt J., Stadler P., De Lemos S. M. C., Suzuki S. I., Sumirat U., Wai C. M., Dauchot N., Orozco-Arias S., Garavito A., Kiwuka C., Musoli P., Nalukenge A., Guichoux E., Reinout H., Smit M., Carretero-Paulet L., Guerreiro O., Braghini M. T., Padilha L., Sera G. H., Ruttink T., Henry R., Marraccini P., Van de Peer Y., Andrade A., Domingues D., Giuliano G., Mueller L., Pereira L. F., Plaisance S., Poncet V., Rombauts S., Sankoff D., Albert V. A., Crouzillat D., De Kochko A., Descombes P.. 2024. The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. Nature Genetics. 56. 721-731.

De la Fuente C., Grondin A., Sine B., Debieu M., Belin C., Hajjarpoor A., Atkinson J., Passot S., Salson M., Orjuela J., Tranchant-Dubreuil C., Brossier J.-R., Steffen M., Morgado C., Dinh H. N., Pandey B., Darmau J., Champion A., Petitot A.-S., Barrachina C., Pratlong M., Mounier T., Gantet P., Gangashetty P., Guedon Y., Vadez V., Reichheld J.-P., Bennett M., Kane N., Guyomarc'h S., Wells D., Vigouroux Y., Laplaze L.. 2024. Glutaredoxin regulation of primary root growth confers early drought stress tolerance in pearl millet. eLife. 12.

Ntakirutimana F., Tranchant-Dubreuil C., Cubry P., Chougule K., Zhang J., Wing RA., Adam H., Lorieux M., Jouannic S.. 2023. Genome-wide association analysis identifies natural allelic variants associated with panicle architecture variation in African rice, Oryza glaberrima Steud. G3: Genes| Genomes| Genetics. 13(10). jkad174.

Salson M., Orjuela J., Mariac C., Zekraoui L., Couderc M., Arribat S., Rodde N., Faye A., Kane N., Vigouroux Y., Tranchant-Dubreuil C., Berthouly-Salazar C.. 2023. An improved assembly of the pearl millet reference genome using Oxford Nanopore long reads and optical mapping. G3: Genes| Genomes| Genetics. 13(5). 1-7.

Tranchant-Dubreuil C., Chenal C., Blaison M., Albar L., Klein V., Mariac C., Wing R. A., Vigouroux Y., Sabot F.. 2023. FrangiPANe, a tool for creating a panreference using left behind reads. NAR Genomics and Bioinformatics. 5(1). lqad013.

Robson J. K., Ferguson J. N., Mcausland L., Atkinson J. A., Tranchant-Dubreuil C., Cubry P., Sabot F., Wells D. M., Price A. H., Wilson Z. A., Murchie E. H.. 2023. Chlorophyll fluorescence-based high-throughput phenotyping facilitates the genetic dissection of photosynthetic heat tolerance in African (Oryza glaberrima) and Asian (Oryza sativa) rice. Journal of Experimental Botany. 74(17). 5181-5197.

Tournebize R., Borner L., Manel S., Meynard C., Vigouroux Y., Crouzillat D., Fournier C., Kassam M., Descombes P., Tranchant-Dubreuil C., Parrinello H., Kiwuka C., Sumirat U., Legnate H., Kambale J., Sonké B., Mahinga J. C., Musoli P., Janssens S. B., Stoffelen P., De Kochko A., Poncet V.. 2022. Ecological and genomic vulnerability to climate change across native populations of Robusta coffee (Coffea canephora). Global Change Biology. 28(13). 4124-4142.

Hosni H., Diallo A., Morcillo F., Vaissayre V., Collin M., Tranchant-Dubreuil C., Dussert S., Joët T., Castaño F., Marquínez X., Stauffer F. W., Hodel D. R., Castillo Mont J. J., Adam H., Jouannic S., Tregear J. W.. 2021. Redox-related gene expression and sugar accumulation patterns are altered in the edible inflorescence produced by the cultivated form of pacaya palm (Chamaedorea tepejilote). Annals of Botany. 128(2). 231-240.

Cubry P., Pidon H., Ta KN., Tranchant-Dubreuil C., Thuillet A-C., Holzinger M., Adam H., Kam H., Chrestin H., Ghesquière A., François O., Sabot F., Vigouroux Y., Albar L., Jouannic S.. 2020. Genome Wide Association Study Pinpoints Key Agronomic QTLs in African Rice Oryza glaberrima. Rice. 13. 66.

Grondin A., Affortit P., Tranchant-Dubreuil C., De la Fuente-Canto C., Mariac C., Gantet P., Vadez V., Vigouroux Y., Laplaze L.. 2020. Aquaporins are main contributors to root hydraulic conductivity in pearl millet [Pennisetum glaucum (L) R. Br.]. PLOS ONE. 15(10). e0233481.

Tranbarger T. J., Domonhedo H., Cazemajor M., Tranchant-Dubreuil C., Fischer U., Morcillo F.. 2019. The PIP Peptide of inflorescence deficient in abscission enhances populus leaf and Elaeis guineensis fruit abscission. Plants. 8(6). 143.

Atindehou M., Adeoti K., Loko L. E. Y., Beulé T., Paradis E., Djedatin G., Tranchant-Dubreuil C., Sabot F., Lagnika L., Jaligot E.. 2019. MooSciTIC: Training of trainers in West African research and higher education. PLOS Biology. 17(6). e3000312.

Merot‐L'anthoene V., Tournebize R., Darracq O., Rattina V., Lepelley M., Bellanger L., Tranchant-Dubreuil C., Coulee M., Pegard M., Metairon S., Fournier C., Stoffelen P., Janssens S., Kiwuka C., Musoli P., Sumirat U., Legnate H., Kambale J., Ferreira Da Costa Neto J., Revel C., De Kochko A., Descombes P., Crouzillat D., Poncet V.. 2019. Development and evaluation of a genome-wide Coffee 8.5K SNP array and its application for high-density genetic mapping and for investigating the origin of Coffea arabica L.. Plant Biotechnology Journal. 17(7). 1418-1430.

Tranchant-Dubreuil C., Rouard M., Sabot F.. 2019. Plant Pangenome: Impacts On Phenotypes And Evolution. Annual Plant Reviews online. 2(2). 453-478.