Sabot François – Diade

François

Sabot

Spécialité(s)

Pangénomique

Fonction

Directeur de recherche

Responsabilité(s) collective(s)

Équipe(s)

PANEEC

Institut d’appartenance

IRD

Formé en génétique moléculaire et physiologie, j’ai travaillé sur les éléments transposables (TEs) lors de mon doctorat à l’INRA. Mon post-doctorat à Helsinki a porté sur la mécanique et l’évolution des TEs.
Actuellement à l’IRD, j’étudie les modifications pangénomiques lors de la spécification/domestication, notamment les TEs, avec des approches graphes. Je coordonne aussi actuellement les efforts de l’IRD en IA et numérique.

Mots clés :

Pangénome
Bioinformatique
Évolution
Variations structurales

Publications

Besseiche M., Chambraud E., Dabrowski V., Brandstatt E., Sabot F., Bouchaud C., Gros-Balthazard M.. 2025. DateBack, an evolving open-access repository of Phoenix archaeobotanical data supporting new perspectives on the history of date palm cultivation. Peer Community Journal. 5. e55.

Rebollo R., Gerenton P., Cumunel E., Mary A., Sabot F., Burlet N., Gillet B., Hughes S., Oliveira D., Goubert C., Fablet M., Vieira C., Lacroix V.. 2024. Identification and quantification of transposable element transcripts using Long-Read RNA-seq in Drosophila germline tissues. Peer Community Journal. 4. e89.

Adam H., Gutierrez A., Couderc M., Sabot F., Ntakirutimana F., Serret J., Orjuela J., Tregear J., Jouannic S., Lorieux M.. 2023. Genomic introgressions from African rice (Oryza glaberrima) in Asian rice (O. sativa) lead to the identification of key QTLs for panicle architecture. BMC Genomics. 24. 587.

Tranchant-Dubreuil C., Chenal C., Blaison M., Albar L., Klein V., Mariac C., Wing R. A., Vigouroux Y., Sabot F.. 2023. FrangiPANe, a tool for creating a panreference using left behind reads. NAR Genomics and Bioinformatics. 5(1). lqad013.

Bonnamy M., Pinel-Galzi A., Gorgues L., Chalvon V., Hebrard E., Cheron S., Nguyen T. H., Poulicard N., Sabot F., Pidon H., Champion A., Cesari S., Kroj T., Albar L.. 2023. Rapid evolution of an RNA virus to escape recognition by a rice nucleotide-binding and leucine-rich repeat domain immune receptor. New Phytologist. 237(3). 900-913.

Sedah P., Djedatin L. G., Loko L. Y. E., Gbemavo C. D. S. J., Orobiyi A., Toffa J., Tchakpa C., Ewedje E. B. K., Sabot F.. 2023. Agro-morphological and structural diversity of rice germplasm revealed by SSR markers in Benin Republic. Molecular Biology Reports. 50. 10207-10217.

Sedah P., Djedatin L. G., Loko L. Y. E., Ewedje Eebk, Orobiyi A., Gbemavo C. D. S. J., Toffa J., Tchakpa C., Cubry P., Sabot F.. 2023. Impact of seed origin and genetic drift of improved rice variety IR841 in Benin. Rice. 16. 48.

Peticca A., Fodil M., Gateau H., Mouget J.-L., Sabot F., Chenais B., Casse N.. 2023. Complete mitochondrial genome and draft chloroplastic genome of Haslea ostrearia (Simonsen 1974). Mitochondrial DNA Part B: Resources. 8(10). 1092-1096.

Robson J. K., Ferguson J. N., Mcausland L., Atkinson J. A., Tranchant-Dubreuil C., Cubry P., Sabot F., Wells D. M., Price A. H., Wilson Z. A., Murchie E. H.. 2023. Chlorophyll fluorescence-based high-throughput phenotyping facilitates the genetic dissection of photosynthetic heat tolerance in African (Oryza glaberrima) and Asian (Oryza sativa) rice. Journal of Experimental Botany. 74(17). 5181-5197.

Mohamed M., Sabot F., Varoqui M., Mugat B., Audouin K., Pelisson A., Fiston-Lavier A.-S., Chambeyron S.. 2023. TrEMOLO: accurate transposable element allele frequency estimation using long-read sequencing data combining assembly and mapping-based approaches. Genome Biology. 24. 63.

Sabot F.. 2022. Diving, and even diging, into the wild jungle of annotation pathways for nons-vertebrate animals. Peer Community Journal. 2. e29.

Orjuela J., Comte A., Ravel S., Charriat F., Vi T., Sabot F., Cunnac S.. 2022. CulebrONT: a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes. Peer Community Journal. 2. e46.

Loko Y. L. E., Gbemavo C. D. S. J., Djedatin G. Ewedje E. E., Orobiyi A., Toffa J., Tchakpa C., Sedah P., Sabot F.. 2022. Characterization of rice farming systems, production constraints and determinants of adoption of improved varieties by smallholder farmers of the Republic of Benin. Scientific Reports. 12. 3959.

Durant É., Rouard M., Ganko E. W., Muller C., Cleary A. M., Farmer A.D., Conte M., Sabot F.. 2022. Ten simple rules for developing visualization tools in genomics. PLOS Computational Biology. 18(11). e1010622.

Gbemavo C. D. S. J., Toffa J., Tchakpa C., Loko Y. L. E., Djedatin G., Ewedje E. E., Orobiyi A., Sedah P., Sabot F.. 2022. Rice farmers' perceptions and response to climate variability, and determinants of adaptation strategies in the Republic of Benin. International Journal of Climate Change Strategies and Management. 14(4). 332-353.

Sabot F.. 2022. On the importance of metadata when sharing and opening data. BMC Genomic Data. 23. 79.

Sabot F.. 2021. Using small fragments to discover old TE remnants: the Duster approach empowers the TE detection. Peer Community Journal. 2. e14.

Barro M., Konate K.A., Wonni I., Kassankogno A.I., Sabot F., Albar L., Somda I., Bena G., Ghesquière A., Kam H., Sie M., Cubry P., Tollenaere C.. 2021. Assessment of genetic diversity of rice in registered cultivars and farmers' fields in Burkina Faso. Crops. 1(3). 129-141.

Yeyinou L., Eben-Ezer E., Azize O., Gustave D., Joelle T., Chalemagne G., Cyrille T., Gavoedo D., Paulin S., Sabot F.. 2021. On-farm management of rice diversity, varietal preference criteria, and farmers' perceptions of the African (Oryza glaberrima Steud.) versus Asian rice (Oryza sativa L.) in the Republic of Benin (West Africa): implications for breeding and conservation. Economic Botany. 17. 1-29.

Toffa J., Yeyinou Laura Estelle L., Gustave D., Charlemagne G., Azize O., Cyrille T., Eben‐Ezer E., Sabot F.. 2021. Rice pests in the Republic of Benin: farmers’ perceptions, knowledge and management practices. Pest Management Science. 77(11). 5058-5071.

Kalendar R., Sabot F., Rodriguez F., Karlov G., Natali L., Alix K.. 2021. Mobile Elements and Plant Genome Evolution, Comparative Analyzes and Computational Tools [Editorial]. Frontiers in Plant Science. 12. 735134.

Guignon V., Breton C., Mariette J., Sabot F., Fumey J., Lefort V., Fiston-Lavier A.-S.. 2021. Ten simple rules for switching from face-to-face to remote conference: An opportunity to estimate the reduction in GHG emissions. PLOS Computational Biology. 17(10). e1009321.

Durant É., Sabot F., Conte M., Rouard M.. 2021. Panache: a Web Browser-Based Viewer for Linearized Pangenomes. Bioinformatics. 37(23). 4556-4558.

Cubry P., Pidon H., Ta KN., Tranchant-Dubreuil C., Thuillet A-C., Holzinger M., Adam H., Kam H., Chrestin H., Ghesquière A., François O., Sabot F., Vigouroux Y., Albar L., Jouannic S.. 2020. Genome Wide Association Study Pinpoints Key Agronomic QTLs in African Rice Oryza glaberrima. Rice. 13. 66.

Mohamed M., Dang T. M. N., Ogyama Y., Burlet N., Mugat B., Boulesteix M., Merel V., Veber P., Salces-Ortiz J., Severac D., Pelisson A., Vieira C., Sabot F., Fablet M., Chambeyron S.. 2020. A transposon story: from TE content to TE dynamic invasion of Drosophila genomes using the single-molecule sequencing technology from Oxford Nanopore. Cells. 9(8). 1776.

Atindehou M., Adeoti K., Loko L. E. Y., Beulé T., Paradis E., Djedatin G., Tranchant-Dubreuil C., Sabot F., Lagnika L., Jaligot E.. 2019. MooSciTIC: Training of trainers in West African research and higher education. PLOS Biology. 17(6). e3000312.

Tranchant-Dubreuil C., Rouard M., Sabot F.. 2019. Plant Pangenome: Impacts On Phenotypes And Evolution. Annual Plant Reviews online. 2(2). 453-478.

Bethune K., Mariac C., Couderc M., Scarcelli N., Santoni S., Ardisson M., Martin J.-F., Montufar R., Klein V., Sabot F., Vigouroux Y., Couvreur T. L. P.. 2019. Long-fragment targeted capture for long-read sequencing of plastomes. Applications in Plant Sciences. 7(5). e1243.